Prepare your media to boot Windows Embedded CE with Diskprep
A new tool has just been published to help you prepare any hard disk that can be attached to your development PC to boot a x86-Based Windows CE OS Design. It also includes advanced tools to prepare a VM disk for Virtual PC.
Windows Embedded CE DiskPrep PowerToy
https://code.msdn.microsoft.com/DiskPrep
Please feel free to post your comments on the discussions tab of the project Webpage.